FastQCFastQC Report
Wed 8 May 2024
EGAF00007960714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494783
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12910.260922464999808No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12380.2502106984273914No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12140.24536008714931595No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11110.22454288041424222No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9330.18856751343518272No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9140.18472744617337297No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8110.16391023943829922No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA7130.14410357671949117No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6950.1404656182609346No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6410.12955174288526486No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6310.1275306548527334No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6230.12591378442670828No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6080.12288215237791111No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5720.11560623546079797No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5640.11398936503477283No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5520.11156405939573509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)