FastQCFastQC Report
Wed 8 May 2024
EGAF00007960715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494783
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG28020.5663088667153076No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25400.513356360262984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12940.2615287914095674No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12140.24536008714931595No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10520.21261846102230675No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9070.18331268455060096No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7410.14976262321057918No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG7360.14875207919431346No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6770.13682765980237802No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6660.13460446296659345No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6560.132583374934062No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6210.12550956682020198No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6110.12348847878767057No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5810.11742521469007626No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5770.11661677947706367No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5620.11358514742826652No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5270.10651133931440651No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4970.10044807521681222No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCTCT4950.10004385761030593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)