FastQCFastQC Report
Wed 8 May 2024
EGAF00007960716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482168
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12550.2602827230342951No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11830.24535016840603274No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10850.2250253023842312No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10710.22212175009540244No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8890.18437557034062815No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8740.18126462145974018No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7900.16384330772676745No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA6850.1420666655605515No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6490.13460038824642034No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6170.12796369730052595No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6050.12547493819581557No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5960.12360836886728277No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5640.11697167792138838No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5460.11323853926432281No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5020.10411308921371805No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5020.10411308921371805No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG4980.10328350284548124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)