FastQCFastQC Report
Wed 8 May 2024
EGAF00007960717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482168
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG27080.5616299712963116No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT24950.5174544971877022No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22820.47327902307909275No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12690.2631862753231239No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11430.2370543047236648No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10760.22315873305569842No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8670.17981284531532576No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG7030.1457998042176171No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6660.1381261303114267No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6160.12775630070846675No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6090.12630452456405236No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5810.12049741998639478No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5760.11946043702609878No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5720.11863085065786198No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5570.11551990177697401No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5270.10929800401519801No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT5090.10556486535813245No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4900.10162433010900765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)