FastQCFastQC Report
Wed 8 May 2024
EGAF00007960718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497140
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13680.2751739952528463No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13260.2667256708371887No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11350.22830590980407933No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11160.22448404875890093No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9200.18505853481916565No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8850.17801826447278432No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7960.1601158627348433No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA6870.13819044937039868No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6620.13316168483726917No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6600.1327593836746188No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6530.13135132960534257No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6010.1208914993764332No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5890.11847769240053105No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5880.11827654181920585No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5880.11827654181920585No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5460.1098282174035483No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5130.10319024821981737No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5100.1025867964758418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)