FastQCFastQC Report
Wed 8 May 2024
EGAF00007960719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497140
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG30080.6050609486261415No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT26300.5290260288852234No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13010.26169690630405923No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12040.24218529991551674No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10820.21764492899384477No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8570.1723860481956793No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7240.14563302087943036No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7150.14382266564750373No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG7080.14241461157822746No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6670.13416743774389506No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6440.12954097437341594No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6200.12471336042161163No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5970.12008689705113249No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5760.1158627348433037No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5630.11324777728607636No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5320.10701210926499578No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5290.10640865752102023No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4980.10017298949993965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)