FastQCFastQC Report
Wed 8 May 2024
EGAF00007960720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485783
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12590.2591692175312845No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12370.25464044645448686No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11490.23652536214729625No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11400.23467268307042444No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9100.1873264399948125No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8900.1832093753795419No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7730.15912454738020884No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCA6640.13668654522698406No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6610.1360689855346935No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6510.13401045322705818No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6330.13030509507331464No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5940.12227681907353695No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5850.12042413999666518No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5650.11630707538139456No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5400.11116074461230631No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5280.10869050584314396No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG4970.10230905568947452No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4880.10045637661260275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)