FastQCFastQC Report
Wed 8 May 2024
EGAF00007960721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485783
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29160.6002680209064541No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25970.534600840292888No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22840.47016877906390303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12500.25731653845441277No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11750.24187754614714801No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10330.21264638737872674No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8790.18094498984114307No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6970.14347970184218056No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAACAG6730.13853922430385582No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6690.13771581138080172No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6600.13586313230392993No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6250.12865826922720638No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5880.12104169968895576No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5840.12021828676590164No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5580.11486610276604987No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4950.10189734922794746No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4930.10148564276642039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)