FastQCFastQC Report
Wed 8 May 2024
EGAF00007960722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499252
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11140.22313380817703285No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9900.19829665179107947No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5530.11076570549542115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)