FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007960730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481556
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC20020.41573565691217634No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC15890.3299720074093148No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12280.2550066866574189No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG10270.21326699283157097No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9570.19873078105142497No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7090.1472310593160505No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCG6520.13539442972364585No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGG6090.12646504248727042No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACAC6050.12563440181411922No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5470.1135901120534268No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCG5420.1125518112119878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)