FastQCFastQC Report
Wed 8 May 2024
EGAF00007960731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481556
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAGGGCAAACTGGAATACCGTCACACCTGG21420.44480808047246845No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA15900.3301796675776026No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA12380.25708328834029687No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10290.2136823131681466No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG10150.21077507081211738No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACGTC7170.14889234066235288No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6970.14473913729659685No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCTCT6560.13622507039679704No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGCGT6470.13435612888220685No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6150.12771100349699724No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTGGC5710.11857395609233402No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5460.11338245188513901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)