FastQCFastQC Report
Wed 8 May 2024
EGAF00007960732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466411
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC19440.41679977530547097No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC14140.30316609170881476No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12170.26092866591911423No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG10110.21676161154003656No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9330.20003816376543437No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6600.14150609655432655No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCG6510.13957646796494938No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACAC5630.12070898842437248No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGG5580.11963697254138517No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5230.1121328613604739No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCG5040.10805920100512209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)