FastQCFastQC Report
Wed 8 May 2024
EGAF00007960733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466411
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22960.4922696934677784No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG21130.4530339121504424No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA14320.3070253488875691No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11840.25385336109139794No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9990.21418877342086698No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9910.2124735480080873No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACGTC7300.15651431891614906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6540.14021967749474176No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCTCT5940.1273554868988939No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGCGT5750.12328182654354207No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5180.11106084547748658No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTGGC5160.11063203912429166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)