FastQCFastQC Report
Wed 31 May 2023
EGAF00007960734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482336
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC18920.39225767929410205No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC15950.3306823459165395No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12410.2572895243150003No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9970.206702381742188No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9870.20462913819412196No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6680.13849266901081403No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACAC6410.13289491143103563No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCG6360.13185828965700258No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGG5910.12252869369070522No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5530.11465036820805415No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCG5260.10905261062827572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)