FastQCFastQC Report
Wed 8 May 2024
EGAF00007960735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482336
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAGGGCAAACTGGAATACCGTCACACCTGG20790.4310273336429377No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA16200.3358654547867047No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA12090.25065514496118885No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10810.2241176275459431No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9990.20711703045180122No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACGTC7150.14823691368672462No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6730.13952929078484708No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGCGT6620.1372487228819744No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCTCT6330.13123631659258275No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5880.12190672062628541No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5510.11423571949844091No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTGGC5280.10946725933788894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)