FastQCFastQC Report
Wed 8 May 2024
EGAF00007960736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470482
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTAC19730.41935716988110067No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC15610.331787401005777No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12080.2567579631101721No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG10510.22338792982515804No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9540.2027707755025697No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6960.1479333959641389No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCG6680.1419820524483402No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACAC6130.13029191339944993No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGG5770.12264018602199446No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5350.11371317074829644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)