FastQCFastQC Report
Wed 8 May 2024
EGAF00007960737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470482
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22490.47802041310825916No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG21110.4486887914946799No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA15920.33837638846969703No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11680.2482560438018883No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10820.229976917289078No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9250.1966068840040639No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACGTC7290.1549474793934731No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7030.1494212318430886No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGCGT6300.13390522910547056No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCTCT6260.13305503717464218No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5440.11562610259266029No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)