FastQCFastQC Report
Wed 8 May 2024
EGAF00007960743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497419
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16960.3409600357043056No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5890.1184112388147618No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5320.10695208667139774No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5080.10212718050577078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)