FastQCFastQC Report
Wed 8 May 2024
EGAF00007960744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486926
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7490.15382214135207403No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6820.14006235033660147No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5330.10946221807831169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)