FastQCFastQC Report
Wed 8 May 2024
EGAF00007960745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486926
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22250.45694828372278334No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16760.34420014540197075No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5330.10946221807831169No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5210.106997777896436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)