FastQCFastQC Report
Wed 8 May 2024
EGAF00007960746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494461
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7320.148039986975717No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6200.12538906000675482No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6150.12437785790992617No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5240.10597397974764441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)