FastQCFastQC Report
Wed 8 May 2024
EGAF00007960747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494461
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14310.28940604011236476No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11140.22529582717342725No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6190.12518681958738911No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6020.12174873245817162No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5590.11305239442544507No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5300.1071874222638388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)