FastQCFastQC Report
Wed 8 May 2024
EGAF00007960748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481145
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6450.13405522243814236No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6000.12470253250059754No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5630.11701254299639402No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5280.10973822860052583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)