FastQCFastQC Report
Wed 8 May 2024
EGAF00007960749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481145
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22460.46680314666057005No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12940.26894179509295535No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG10900.2265429340427522No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6100.12678090804227415No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5860.12179280674225025No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5490.11410281723804674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)