FastQCFastQC Report
Wed 8 May 2024
EGAF00007960750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497150
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7100.14281404002816053No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5650.11364779241677563No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5600.11264205974052097No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5490.11042944785276074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)