FastQCFastQC Report
Wed 8 May 2024
EGAF00007960751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497150
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13990.2814040028160515No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12330.24801367796439705No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6280.12632002413758425No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6180.12430855878507494No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5740.11545811123403399No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5680.1142512320225284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)