FastQCFastQC Report
Wed 8 May 2024
EGAF00007960753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482519
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21420.4439203430331241No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13240.27439333995138016No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11640.24123402394517107No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6430.13325900119995274No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5460.11315616587118849No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5230.10838951419529594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)