FastQCFastQC Report
Wed 8 May 2024
EGAF00007960754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477034
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15780.3307940314526847No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14510.30417119115199337No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9600.20124351723357245No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8010.16791255969176203No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7170.15030375193382442No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7100.14883635128732964No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6080.12745422758126257No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5700.11948833835743365No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5620.11781130904715387No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5290.11089356314224982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)