FastQCFastQC Report
Wed 8 May 2024
EGAF00007960755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477034
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG34780.7290884926441302No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10770.2257700708964141No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10580.22178712628449965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9360.19621242930273317No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7640.16015629913171806No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7220.15135189525274928No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6500.13625863146023134No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6150.12892162822775735No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5920.12410016896070301No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5360.11236096378874462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)