FastQCFastQC Report
Wed 8 May 2024
EGAF00007960756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464590
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16250.3497707656213005No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14710.31662325921780493No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8800.1894143223056889No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8250.17757592716158332No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7150.1538991368733722No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6770.14571988204653566No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6070.1306528336813104No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5780.12441077078714564No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5380.1158010288641598No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC4900.10546933855657677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)