FastQCFastQC Report
Wed 8 May 2024
EGAF00007960757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464590
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36390.7832712714436385No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22180.47741018962956583No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10990.23655265933403644No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10290.22148561096881123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8780.1889838352095396No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7320.15755827719064122No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6980.15023999655610323No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6280.135172948190878No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6240.1343119739985794No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5970.12850039820056394No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4860.10460836436427819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)