FastQCFastQC Report
Wed 8 May 2024
EGAF00007960758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480339
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16400.3414255348826558No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15330.3191496005945801No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9880.20568806613662435No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8400.17487649347648224No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7600.1582215893358649No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7160.14906139205852534No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6240.12990825229681538No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6220.12949187969329992No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5600.11658432898432149No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC4890.10180310155952357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)