FastQCFastQC Report
Wed 8 May 2024
EGAF00007960759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480339
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG37710.7850705439283506No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11100.2310867949510658No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10490.21838743054384507No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9810.20423076202432033No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7790.16217712906926152No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7590.15801340303410716No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6700.13948482217767036No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6340.13199011531439253No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6270.13053281120208854No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5800.12074805501947584No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4880.10159491525776587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)