FastQCFastQC Report
Wed 8 May 2024
EGAF00007960760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467043
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16590.35521354564783114No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15470.3312328843382729No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9700.2076896559845667No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8350.17878439458465278No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6620.14174283738328164No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6310.13510533291367174No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6210.13296420243960405No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5720.12247266311667235No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5350.11455048036262186No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC4910.10512950627672397No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC4770.10213192361302921No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4760.10191781056562244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)