FastQCFastQC Report
Wed 8 May 2024
EGAF00007960761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467043
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG38030.8142719192879457No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21320.45648901707123324No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10540.22567515196673538No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10260.21967998663934585No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9430.20190860370458394No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6750.14452630699956964No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6650.14238517652550192No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6530.13981581995662068No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6100.1306089589181296No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5680.12161621092704525No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4940.1057718454189443No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4920.10534361932413075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)