FastQCFastQC Report
Wed 8 May 2024
EGAF00007960762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441456
Total Bases18 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG12980.29402703780218187No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11300.2559711500126853No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11070.2507611177557899No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT10510.2380758218259577No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10360.23467797470189555No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG10200.23105360443622922No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9130.20681562828458555No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8940.2025116885941068No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7780.1762350041680258No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7260.1644558008046102No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6960.15766010655648582No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT6910.15652749084846507No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6400.14497481062665363No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6050.1370465006705085No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6020.13636693124569604No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6000.13591388496248777No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6000.13591388496248777No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5900.1336486535464463No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACG5460.12368163531586387No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA5440.12322858903265559No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5430.12300206589105143No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5350.12118988075821827No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG5320.12051031133340581No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4790.10850458482838607No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4720.10691892283715705No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC4470.1012558442970534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)