FastQCFastQC Report
Wed 8 May 2024
EGAF00007960763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441456
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22210.5031078975028089No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG12680.2872313435540575No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12210.2765847558986626No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC11560.2618607516943931No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG10990.24894893262295678No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10900.24691022434851945No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA10530.23852886810916601No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10450.2367166829763329No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9530.2158765539487514No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG8760.19843427204523215No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7870.17827371244246312No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7830.17736761987604655No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6870.1556213982820485No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6760.15312964372440288No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6530.1479196114675075No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6530.1479196114675075No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6280.14225653292740387No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6050.1370465006705085No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGTCT5670.12843862128955094No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC5670.12843862128955094No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5600.1268529592983219No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5440.12322858903265559No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5380.12186945018303069No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5280.11960421876698925No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5140.11643289478453119No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4950.11212895509405241No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4910.11122286252763583No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTTAC4730.10714544597876119No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4730.10714544597876119No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG4500.10193541372186582No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4460.10102932115544924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)