FastQCFastQC Report
Wed 8 May 2024
EGAF00007960764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422990
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG12120.28653159649164284No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10840.25627083382585875No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10750.2541431239509208No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG10400.2458686966594955No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT10220.24161327690961962No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG9890.23381167403484718No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9130.21584434620203788No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8410.19882266720253433No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7680.18156457599470438No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7370.1742357975365848No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT6750.15957824062034562No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6140.14515709591243292No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5860.13853755407929266No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5780.13664625641268116No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5460.12908106574623512No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5290.1250620582046857No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACG5230.12364358495472706No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5190.12269793612142131No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5130.12127946287146268No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA4980.11773327974656611No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4960.11726045532991325No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT4960.11726045532991325No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG4790.11324144778836379No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4710.11135015012175228No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT4670.11040450128844653No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4510.10662190595522353No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACG4440.10496702049693847No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG4350.10283931062200052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)