FastQCFastQC Report
Wed 8 May 2024
EGAF00007960765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422990
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG24030.5680985366084305No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21570.5099411333601267No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG11750.2777843447835646No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG11140.2633632000756519No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA10480.24775999432610699No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10410.24610510886782194No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG10370.24515946003451616No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10250.24232251353459894No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC10100.23877633040970234No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8410.19882266720253433No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG8080.19102106432776186No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7820.1848743469112745No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7750.18321946145298942No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6540.15461358424549043No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6080.1437386226624743No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6030.1425565616208421No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5920.13995602732925128No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5780.13664625641268116No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5340.1262441192463179No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC5280.12482564599635924No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGTCT5240.12387999716305349No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5170.12222511170476844No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5030.1189153407881983No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4890.11560556987162816No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA4850.11465992103832241No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4850.11465992103832241No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG4840.11442350882999597No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTTAC4740.1120593867467316No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG4630.10945885245514078No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4430.10473060828861203No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4410.10425778387195914No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4370.1033121350386534No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4360.10307572283032695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)