FastQCFastQC Report
Wed 8 May 2024
EGAF00007960766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440859
Total Bases18 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG12760.2894349440524068No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11240.25495680024679096No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11140.25268850131221093No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11030.25019337248417295No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT10630.24112017674585298No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG10340.23454210983557103No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9680.2195713368673431No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9400.21322009985051912No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8450.19167125997200918No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT7680.17420535817574329No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7620.17284437881499526No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6640.15061504925611136No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6330.1435833225589134No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6170.1399540442635854No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6020.13655159586171542No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5850.13269548767292944No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5790.13133450831218144No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5630.12770523001685347No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5530.12543693108227347No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG5470.12407595172152547No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5400.12248814246731948No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACG5340.1211271631065715No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA5240.1188588641719915No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4830.10955883854021353No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4700.10661004992525956No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT4690.10638322003180155No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACG4470.10139296237572556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)