FastQCFastQC Report
Wed 8 May 2024
EGAF00007960767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440859
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25350.5750137799160276No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG12570.2851251760767048No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12100.27446417108417887No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC11150.25291533120566895No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG11080.2513275219514629No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA10950.24837873333650892No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10790.24474945504118095No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10630.24112017674585298No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG9280.21049814112902313No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8980.20369324432528316No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8390.1903102806112612No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8120.18418587348789522No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6880.15605896669910335No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6720.15242968840377535No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6690.15174919872340137No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6480.14698577096078339No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6410.1453979617065774No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5990.13587110618134143No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGTCT5610.12725157022993747No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5580.12657108054956345No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC5560.12611742076264748No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5480.12430278161498348No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5460.12384912182806748No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5160.11704422502432751No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5130.11636373534395351No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5120.1161369054504955No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4950.11228079726170953No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4930.11182713747479353No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTTAC4790.10865151896638153No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG4750.10774419939254955No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4490.10184662216264158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)