FastQCFastQC Report
Wed 8 May 2024
EGAF00007960768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427813
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG13300.31088349348897765No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11570.27044526463665197No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10820.2529142405677247No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10750.2512780116546248No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG10310.2409931442008541No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9790.22883830084639784No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT9620.22486460205744097No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9000.21037228882712775No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7550.1764789756272016No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7340.17157028888790196No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT7130.16666160214860232No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6540.15287052988104616No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5810.13580699978729022No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5700.13323578292384758No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5660.13230079497350478No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5500.12856084317213362No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGA5480.12809334919696222No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACG5450.12739210823420513No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5440.12715836124661942No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5320.12435339739559108No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG5310.12411965040800538No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5270.12318466245766259No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT4850.11336728897906327No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4840.1131335419914776No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACG4830.1128997950038919No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4520.10565363838873527No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC4390.1026149275501212No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG4370.10214743357494979No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4350.10167993959977842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)