FastQCFastQC Report
Wed 8 May 2024
EGAF00007960769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427813
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG24160.5647327220070452No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20130.470532686010009No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG12920.30200110796072116No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12030.28119762606559406No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC10890.25455046948082455No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA10560.24683681889049652No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10550.24660307190291086No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG9970.2330457466229404No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9870.2307082767470834No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8700.20335987919955684No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG8450.1975162045099144No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8270.19330875873337183No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7310.17086904792514485No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6140.14352065037761824No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6100.14258566242727547No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6050.14141692748934698No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6030.14094943351417558No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5850.13674198773763305No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5730.13393702388660467No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACCAC5600.13089831304799057No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5550.1297295781100621No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5440.12715836124661942No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGTCT5390.12598962630869093No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTTAC4980.11640599981767735No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4960.11593850584250595No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA4940.11547101186733456No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4810.11243230102872048No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4800.11219855404113478No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4760.11126356609079201No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG4700.10986108416527782No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4340.10144619261219272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)