FastQCFastQC Report
Wed 8 May 2024
EGAF00007960770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479555
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12270.2558622055864291No Hit
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCAC11240.23438396012970358No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11190.23334132685510522No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9720.2026879085819145No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9690.20206232861715548No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8050.16786395721033043No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7990.16661279728081244No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7900.16473605738653543No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6960.1451345518240869No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5370.11197881369186018No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5300.11051912710742251No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5250.10947649383282418No Hit
GCTTGGTTCCTGTTGCATCTGAGTGATTTCACGACCAGCGC5140.10718270062870787No Hit
GGACGGTTCCTGCTGCATCTGGGTGATCTCACGGCCCGCAC5060.10551448738935054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)