FastQCFastQC Report
Wed 8 May 2024
EGAF00007960771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479555
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20190.42101531628280386No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16160.3369790743501788No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTATT12220.2548195723118307No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11290.23542659340430191No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9700.20227085527207514No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8510.17745618333663501No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8310.1732856502382417No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7410.15451825129547184No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6580.13721053893713964No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC6490.13533379904286266No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5750.11990282657880742No Hit
ATCGTCACCCCGCCTTCCGCACGCCCGCGTATT5490.11448113355089615No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5460.11385555358613714No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5400.11260439365661916No Hit
ATCGTCACCCCGCCGTCTGCACGTCCGCGCATT5350.11156176038202084No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5020.10468038076967187No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC4930.10280364087539491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)