FastQCFastQC Report
Wed 8 May 2024
EGAF00007960772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464783
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11590.2493636815460118No Hit
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCAC10860.23365742722948127No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10710.23043011469868735No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9580.20611769363337298No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9460.20353584360873786No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8430.18137496423061944No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8390.18051434755574106No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6820.1467351430667645No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6690.14393813887340975No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5190.11166501356547034No Hit
GCTTGGTTCCTGTTGCATCTGAGTGATTTCACGACCAGCGC5160.11101955105931155No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5020.1080073926972372No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4970.10693162185363922No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4920.10585585101004125No Hit
GGACGGTTCCTGCTGCATCTGGGTGATCTCACGGCCCGCAC4820.10370430932284529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)