FastQCFastQC Report
Wed 8 May 2024
EGAF00007960773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464783
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22170.47699679205134443No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21540.4634420794220099No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14940.32144032806707645No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTATT11660.250869760727049No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10700.23021496052996773No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9310.2003085310779439No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8930.19213267266659925No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7050.1516836889473152No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6880.14802606807908206No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC6210.13361073877486912No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5690.12242272200145014No Hit
ATCGTCACCCCGCCTTCCGCACGCCCGCGTATT5310.1142468635901055No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5240.11274078440906832No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5240.11274078440906832No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5120.11015893438443318No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT4890.10521038850388245No Hit
ATCGTCACCCCGCCGTCTGCACGTCCGCGCATT4800.1032740009854061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)