FastQCFastQC Report
Wed 8 May 2024
EGAF00007960774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480636
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12400.2579914946029844No Hit
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCAC11510.2394743631355121No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11150.23198428748574806No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9830.20452067676994648No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9810.2041045614560707No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8680.18059404622208908No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7890.1641574913239957No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7400.15396266613403908No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6750.14043891843307618No Hit
GCTTGGTTCCTGTTGCATCTGAGTGATTTCACGACCAGCGC5560.11568005725746719No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5300.11027055817708203No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5220.10860609692157891No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4840.10069990595793907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)