FastQCFastQC Report
Wed 8 May 2024
EGAF00007960775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480636
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22300.46396857497149613No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16040.33372448172837654No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTATT12520.26048818648623906No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11280.23468903702594063No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9630.20035952363118867No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8670.18038598856515117No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7670.15958022287136212No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7130.14834510939671602No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC6460.13440524638187734No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6370.1325327274694363No Hit
ATCGTCACCCCGCCTTCCGCACGCCCGCGTATT5870.1221298446225418No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5520.11484782662971563No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5250.10923026989239258No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5190.10798192395076522No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5010.1042368861258832No Hit
ATCGTCACCCCGCCGTCTGCACGTCCGCGCATT4830.10049184830100118No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4810.1000757329871254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)