FastQCFastQC Report
Wed 8 May 2024
EGAF00007960776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468145
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCAC11670.24928173963195163No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11080.23667880677995068No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9850.21040489591899947No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9400.2007924895064563No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9280.19822918112977816No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8440.18028602249303102No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8390.17921797733608177No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7740.1653333902957417No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7170.1531576755065204No Hit
GCTTGGTTCCTGTTGCATCTGAGTGATTTCACGACCAGCGC5310.11342639566800884No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5150.11000865116577128No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5000.10680451569492358No Hit
GGACGGTTCCTGCTGCATCTGGGTGATCTCACGGCCCGCAC4910.10488203441241495No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4880.10424120731824542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)